Mitochondrial DNA and its application to the molecular population genetics of fish
YUAN Juan1, ZHANG Qi-zhong1,2, LUO Fen3
1. Key laboratory Eco-environments in Three Gorges Reservoir Region(Ministry of Education), Key laboratory of Aquatic science of Chongqing, School of Life Sciences, Southwest University, Chongqing 400715, China; 2. Hydrobiology Institute of Jinan University, Guangzhou 510632, China; 3. Biology Department, Ningde Teachers College, Fujian 352100, China
Fish with most species of vertebrates widely distributes in various water bodies,and holds rich genetic diversity,which plays an important role in survival and evolution of fish.However,fish genetic diversity is seriously affected by various natural and artificial factors in recent years.The researches on present situation of fish genetic diversity by means of molecular markers can lay the foundation for fish genetic breeding,molecular evolution researches and protection of fish genetic resources.Nowadays,the molecular markers including mtDNA,have been applied to studying genetic structure of fish populations and the relationship between the genetic structure and related factors.In the present review,we reviewed the structure,genetic characteristics of mtDNA and its application to the molecular population genetics of fish.
袁娟1, 张其中1,2*, 罗芬3. 鱼类线粒体DNA及其在分子群体遗传研究中的应用[J]. , 2008, 27(4): 272-276.
YUAN Juan1, ZHANG Qi-zhong1,2, LUO Fen3. Mitochondrial DNA and its application to the molecular population genetics of fish. , 2008, 27(4): 272-276.
[10] Lee J S,Miya M,Lee Y S,et al.2001.The complete DNA sequence of the mitochondrial genome of the selffertilizing fish Rivulus marmoratus (Cyprinodontiformes,Rivulidae) and the first description of duplication of a control region in fish[J].Gene,280 (1-2):1-7.
[11] Lee W J,Kocher T D.1995.Complete sequence of a sea lamprey (Petromyzon marinus) mitochondrial genome:early establishment of the vertebrate genome organization[J].Genetics,139(2):873-887.
[12] Delarbre C,Escriva H,Gallut C,et al.2000.The complete nucleotide sequence of the mitochondrial DNA of the agnathan Lampetra fluviatilis:beatings on the phylogeny of cyclostomes[J].Mol Biol Evol,17 (4):519-529.
[13] Brown W M.1983.Evolution of animal mitochondriai DNAs[A].Evolution of genes and proteins[C].Sunderland MA:Sinauer,62-88.
[16] Rognon X,Guyomand R.1997.Mitochondriai DNA differentiation among East and West African Nile tilapia populations[J].J Fish Biol,51:204-207.
[17] [Zhou ; F,Wang Z W,Ye Y Z,et al.2003.PCR-RFLP analysis of mitochondrial DNA ND5/6 region among 3 subspecies of common carp (Cyprinus carpio L.) and its application to genetic discrimination of subspecies[J].Chin Sci Bull,48(5):465-468.
[19] Grunwald C,Stabile J,Waldman J R,et al.2002.Population genetics of short-nose sturgeon (Acipenser brevirostrum) based on mitochondrial DNA control region sequences[J].Mol Ecol,11 (10):1885-1898.
[20] Bernal-Ramirez J H,Adcock G J,Hauser L,et al.2003.Temporal stability of genetic population structure in the New Zealand snapper Pagrus auratus,and relationship to coastal currents[J].Mar Biol,142 (3):567-574.
[21] Falk T M,Teugels G G,Abban E K,et al.2003.Phyiogeographic patterns in populations of the black-chinned tilapia complex (Teleostei,Cichlidae) from coastal areas in West Africa:support for the refuge zone theory[J].Mol Phylogenet Evol,27(1):81-92.
[24] Bartlett S E,Davidson W S.1991.Identification of Thunnus Tuna species by the polymerase chain reaction and direct sequences analysis of their mitochondrial Cytochrome b genes[J].Can J Fish Aquat Sci,48:309-317.
[25] Murakami M,Matsuba C,Fujitani H.2001.The maternal otigins of the triploid ginbtma (Carassius auratus langsdorfi):phylogenetic relationships within the C.auratus taxa by partial mitochondrial Dloop sequencing[J].Genes Genet Syst,76:25-32.
[26] Kotlik P,Berrebi P.2002.Genetic subdivision and biogeography of the Danubian rheophilic barb Barbus petenyi inferred from phylogenetic analysis of mitochondrial DNA variation[J].Mol Phylogenet Evol,24(1):10-18.
[28] Ovenden J R,Lloyd J,Newman S J.2002.Spatial genetic subdivision between northern Australian and Southeast Asian populations of Pristipomoides multidens:a tropical marine reef fish species[J].Fish Res,59:57-69.
[29] Wang J P,Lin H D,Huang S.2004.Phylogeography of Varicorhinus barbatulus (Cyprinidae) in Taiwan based on nucleotide variation of mtDNA and allozymes[J].Mol Phylogenet Evol,31:1143-1156.
[32] Watanabe K,Moil S,Nishida M.2003.Genetic relationships and origin of two geographic groups of the freshwater threespine stickleback‘hariyo'[J].Zoolog Sci,20(2):265-274.
[33] Pfrender M E,Hicks J,Lynch M.2004.Biogeographic patterns and current distribution of molecular-genetic variation among populations of speckled dace,Rhinichthys osculus (Girard)[J].Mol Phylogenet Evol,30:490-502.
